O banco de dados incorporado do Neo4j trava após o encerramento anormal do aplicativo

Vou tornar público meu primeiro aplicativo baseado no banco de dados Neo4j Embedded e tive um sério problema de bloqueio -

Esta é a minha pergunta anterior com exclusão de banco de dados onde estou enfrentando esse problemaLimpar efetivamente o banco de dados Neo4j

Eu uso:

OS: Windows 8.1
jdk1.8.0_51 
neo4j version 2.2.3
lucene version 3.6.2
spring-data-neo4j version 3.4.0.M1

Percebi que tudo funciona corretamente se eu usargraphDatabaseService.shutdown(); antes de finalizar o aplicativo. Caso contrário, o banco de dados será destruído (não apenas o aplicativo, mas também o servidor Neo4j também fica travado nesse db corrompido quando tento carregar meu db incorporado com a interface da Web do Neo4j).

Existe alguma maneira de tornar o banco de dados Neo4j Embedded mais tolerante a falhas? Perderei todos os meus dados após o primeiro erro (por exemplo, evento de blecaute) no ambiente de produção.

Passei alguns dias nessa questão, mas ainda não tenho idéias de como proceder. Por favor ajude.

ATUALIZADA

informações de message.log

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2015-07-27 08:51:59.305+0000 INFO  [o.n.k.i.DiagnosticsManager]:   store_lock: 2015-07-27T11:48:16+0300 - 0,00 B
2015-07-27 08:51:59.305+0000 INFO  [o.n.k.i.DiagnosticsManager]: --- STARTED diagnostics for KernelDiagnostics:StoreFiles END ---
2015-07-27 08:51:59.378+0000 INFO  [o.n.k.EmbeddedGraphDatabase]: Database is now ready
2015-07-27 08:52:02.592+0000 WARN  [o.n.k.EmbeddedGraphDatabase]: GC Monitor: Application threads blocked for 399ms.
2015-07-27 08:52:08.474+0000 INFO  [o.n.k.i.a.i.s.OnlineIndexSamplingJob]: Sampled index :Criterion(name) with 18159 unique values in sample of avg size 18159 taken from index containing 18159 entries
2015-07-27 08:52:11.514+0000 WARN  [o.n.k.EmbeddedGraphDatabase]: GC Monitor: Application threads blocked for 354ms.
2015-07-27 08:52:13.692+0000 WARN  [o.n.k.EmbeddedGraphDatabase]: GC Monitor: Application threads blocked for 336ms.
2015-07-27 08:52:18.760+0000 WARN  [o.n.k.EmbeddedGraphDatabase]: GC Monitor: Application threads blocked for 3728ms.
2015-07-27 08:52:18.764+0000 INFO  [o.n.k.i.a.i.s.OnlineIndexSamplingJob]: Sampled index :CriterionGroup(name) with 1691 unique values in sample of avg size 1691 taken from index containing 1691 entries
2015-07-27 08:52:19.951+0000 WARN  [o.n.k.EmbeddedGraphDatabase]: GC Monitor: Application threads blocked for 490ms.
2015-07-27 08:52:25.130+0000 WARN  [o.n.k.EmbeddedGraphDatabase]: GC Monitor: Application threads blocked for 4476ms.
2015-07-27 08:52:26.492+0000 WARN  [o.n.k.EmbeddedGraphDatabase]: GC Monitor: Application threads blocked for 761ms.
2015-07-27 08:52:33.603+0000 WARN  [o.n.k.EmbeddedGraphDatabase]: GC Monitor: Application threads blocked for 5408ms.
2015-07-27 08:52:35.734+0000 WARN  [o.n.k.EmbeddedGraphDatabase]: GC Monitor: Application threads blocked for 809ms.
2015-07-27 08:52:43.564+0000 WARN  [o.n.k.EmbeddedGraphDatabase]: GC Monitor: Application threads blocked for 5601ms.

Durante a operação de exclusão, o aplicativo travatx.close(); linha:

public class Neo4jUtils {

    final static Logger logger = LoggerFactory.getLogger(Neo4jUtils.class);

    private static final int BATCH_SIZE = 10;

    public static void cleanDb(Neo4jTemplate template) {
        logger.info("Cleaning database");
        long deletedNodesCount = 0;
        do {
            GraphDatabaseService graphDatabaseService = template.getGraphDatabaseService();
            Transaction tx = graphDatabaseService.beginTx();
            try {
                Result<Map<String, Object>> result = template.query("MATCH (n) WITH n LIMIT " + BATCH_SIZE + " OPTIONAL MATCH (n)-[r]-() DELETE n, r RETURN count(n) as count", null);
                deletedNodesCount = (long) result.single().get("count");
                tx.success();
                logger.info("Deleted " + deletedNodesCount + " nodes...");
            } catch (Throwable th) {
                logger.error("Error while deleting database", th);
                throw th;
            } finally {
                tx.close();
            }
        } while (deletedNodesCount > 0);
    }

}

ATUALIZADA

Encontrei a fonte geral desse problema, mas não tenho idéia no momento de como corrigi-lo.

Este é meuWebSecurityConfig:

@Configuration
@EnableWebSecurity
@EnableWebMvcSecurity
public class WebSecurityConfig extends WebSecurityConfigurerAdapter {


    @Autowired
    private SocialAuthenticationSuccessHandler socialAuthenticationSuccessHandler;

    @Autowired
    private TokenAuthenticationService tokenAuthenticationService;

    @Autowired
    private TokenAuthenticationFilter tokenAuthenticationFilter;

    @Autowired
    private DBUserDetailsService userDetailsService;

.....

}

Eu montei automaticamente 4 campos que usam internamente o Neo4j (DAO, repositórios e assim por diante). O Neo4j trava na reinicialização após o desligamento imundo quando esses campos estão presentes dentro do meu WebSecurityConfig. Quando eu comento esses campos, o problema desaparece.

O que pode estar errado?

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