Actualizado con el Proyecto Wix completo según el craigster

<?xml version="1.0" encoding="UTF-8"?>
<?define SourceDir = "C:\Users\BillSmith\Documents\Visual Studio 2015\Projects\AIS\AIS\bin\Debug" ?>
<?define icon = "C:\Users\BillSmith\Documents\Visual Studio 2015\Projects\AIS\AIS\bin\Debug\1Password.ico" ?>
<?define DesktopFolder = "H:\Desktop" ?>
<Wix xmlns="http://schemas.microsoft.com/wix/2006/wi">  
    <Product Id="*" Name="APS" Language="1033" Version="1.3.0.0" Manufacturer="SS" UpgradeCode="890c447c-5a09-4abb-9b01-fadf5e64aad5">
      <Package Id="*" InstallerVersion="200" Compressed="yes" InstallScope="perMachine"
        Description="APS 1.2"
        Comments="APS will assist you with changing your password with a single click!"
        Manufacturer="SS"
        InstallPrivileges="elevated"
        Platform="x86" />

      <MajorUpgrade DowngradeErrorMessage="A newer version of [ProductName] is already installed." />
      <MediaTemplate EmbedCab="yes" />

      <Feature Id="ProductFeature" Title="AutomatedIDSystemInstaller" Level="1">
        <ComponentGroupRef Id="ProductComponents" />
      </Feature>
    </Product>

    <Fragment>
      <Directory Id="TARGETDIR" Name="SourceDir">
        <Directory Id="ProgramFilesFolder">
          <Directory Id="INSTALLFOLDER" Name="APS" />
        </Directory>
      </Directory>
    </Fragment>
    <Fragment>
      <DirectoryRef Id="TARGETDIR">
        <Directory Id="DesktopFolder" />
      </DirectoryRef>
      <Icon Id="Password.ico" SourceFile="$(var.SourceDir)\1Password.ico" />
      <Property Id="ARPPRODUCTICON" Value="Password.ico" />
    </Fragment>

  <!-- The casing of 'ANOTHERLOCATION' and 'WindowsVolume' is very important here.
     Replace 'MyNewDir' with the correct name of the folder you want on
     WindowsVolume.
-->
    <SetDirectory Id="DesktopFolder" Value="H:\Desktop" />


    <!--<Fragment>
    <Component Id="DesktopShortcut" Directory="APPLICATIONFOLDER" Guid="*">
      <RegistryValue Id="RegShortcutDesktop" Root="HKCU"
              Key="SOFTWARE\APS\settings" Name="DesktopSC" Value="1"
              Type="integer" KeyPath="yes" />
      <Shortcut Id="desktopSC" Target="[APPLICATIONFOLDER]APS.exe"
              Directory="DesktopFolder" Name="APS"
              IconIndex="0"
              WorkingDirectory="APPLICATIONFOLDER" Advertise="no"/>
    </Component>
  </Fragment>-->

    <Fragment>
      <ComponentGroup Id="ProductComponents" Directory="INSTALLFOLDER">
        <!-- TODO: Remove the comments around this Component element and the ComponentRef below in order to add resources to this installer. -->
        <!-- <Component Id="ProductComponent"> -->
        <!-- TODO: Insert files, registry keys, and other resources here. -->
        <!-- </Component> -->
        <!--<Component Id="ProductComponents">
        <File Source="$(var.AutomatedIDSystem.TargetPath)" KeyPath="yes">
          <Shortcut Id="APSShortcut" 
                    Name="APS"
                    Advertise="yes" 
                    Description="1-Click to Change all your passwords!" 
                    WorkingDirectory="INSTALLFOLDER" 
                    ShortName="APS"                      
                    Directory="DesktopFolder"/>
        </File>
      </Component>-->


        <Component Guid="{27E3322C-C85D-4451-A06D-21B524878CA0}">

          <File Source="$(var.AutomatedIDSystem.TargetPath)" KeyPath="yes">

            <Shortcut Id="APSShortcut"
                      Name="APS"
                      Advertise="yes"
                      Description="1-Click to Change all your passwords!"
                      WorkingDirectory="INSTALLFOLDER"
                      ShortName="APS"
                      Directory="DesktopFolder" Icon="Password.ico" IconIndex="0" />
          </File>
        </Component>
        <Component Id="HtmlAgilityPack.dll" Guid="{119C78DC-EFE5-4C84-9583-17F3DE341EFC}">
          <File Id="HtmlAgilityPack.dll" Source="$(var.SourceDir)\HtmlAgilityPack.dll" KeyPath="yes" />
        </Component>
        <Component Id="Microsoft.VisualBasic.PowerPacks.Vs.dll" Guid="{D6DBE101-004B-4383-A5F5-7BF16EB0C0FC}">
          <File Id="Microsoft.VisualBasic.PowerPacks.Vs.dll" Source="$(var.SourceDir)\Microsoft.VisualBasic.PowerPacks.Vs.dll" KeyPath="yes" />
        </Component>
        <Component Id="rtools_setup_x64.exe" Guid="{622D3FCF-E3A0-4A12-99B0-E9D7F879CB16}">
          <File Id="rtools_setup_x64.exe" Source="$(var.SourceDir)\rtools_setup_x64.exe" KeyPath="yes" />
        </Component>
        <Component Id="AutomatedIDSystem.application" Guid="{DB61CF4D-E785-44FD-BB95-D19F7D1619FB}">
          <File Id="AutomatedIDSystem.application" Source="$(var.SourceDir)\APS.application" KeyPath="yes" />
        </Component>
        <Component Id="AutomatedIDSystem.exe.config" Guid="{3E1CD5E7-1AF7-47AF-9FE3-30CEC56EF950}">
          <File Id="AutomatedIDSystem.exe.config" Source="$(var.SourceDir)\APS.exe.config" KeyPath="yes" />
        </Component>
        <Component Id="AutomatedIDSystem.exe.manifest" Guid="{07689029-E9E0-47C0-87D7-5A94FC959EDF}">
          <File Id="AutomatedIDSystem.exe.manifest" Source="$(var.SourceDir)\APS.exe.manifest" KeyPath="yes" />
        </Component>
        <Component Id="AutomatedIDSystem.pdb" Guid="{4D3FBB60-6F55-439E-A88B-ADE7AF7A7459}">
          <File Id="AutomatedIDSystem.pdb" Source="$(var.SourceDir)\APS.pdb" KeyPath="yes" />
        </Component>
        <!--<Component Id="AutomatedIDSystem.vshost.application" Guid="{684D3AC6-FC03-4E87-944B-2D897169CDDE}">
        <File Id="AutomatedIDSystem.vshost.application" Source="$(var.SourceDir)\APS.vshost.application" KeyPath="yes" />
      </Component>-->
        <Component Id="AutomatedIDSystem.vshost.exe" Guid="{478284E1-999D-481D-91B4-4F8F15B998A6}">
          <File Id="AutomatedIDSystem.vshost.exe" Source="$(var.SourceDir)\APS.vshost.exe" KeyPath="yes" />
        </Component>
        <!--<Component Id="AutomatedIDSystem.vshost.exe.config" Guid="{099D79F8-370D-40FE-A6C2-0B76B6397FC7}">
        <File Id="AutomatedIDSystem.vshost.exe.config" Source="$(var.SourceDir)\APS.vshost.exe.config" KeyPath="yes" />
      </Component>-->
        <!--<Component Id="AutomatedIDSystem.vshost.exe.manifest" Guid="{48F07333-9C5B-4894-961D-531C26874531}">
        <File Id="AutomatedIDSystem.vshost.exe.manifest" Source="$(var.SourceDir)\APS.vshost.exe.manifest" KeyPath="yes" />
      </Component>-->
        <Component Id="Password.ico" Guid="{99391003-D8EE-4E6A-98E2-393F2ECE09D8}">
          <File Id="Password.ico" Source="$(var.SourceDir)\1Password.ico" KeyPath="yes" />
        </Component>
        <Component Id="setup.bat" Guid="{0460C522-A02B-4C8B-A0EE-34F1AFF677D1}">
          <File Id="setup.bat" Source="$(var.SourceDir)\setup.bat" KeyPath="yes" />
        </Component>

        <Component Id="netframework" Guid="{6BFA9239-38C7-4040-9487-6A5D20315CA7}">
          <File Id="netframework" Source="$(var.SourceDir)\dotnetfx452_full_x86_x64.exe" KeyPath="yes" />
        </Component>

        <!--    <Component Id="DesktopShortcut" Directory="DesktopFolder"> -->
        <Component Id="ApplicationShortcutDesktop" Guid="902B784B-B1F0-4629-AAC9-D46845734248">
          <Shortcut Id="ApplicationDesktopShortcut" Name="AppName" Description="APS" Target="[INSTALLFOLDER]APS.exe" WorkingDirectory="INSTALLFOLDER" />
          <RemoveFolder Id="DesktopFolder" On="uninstall" />
          <RegistryValue Root="HKCU" Key="Software\APS" Name="installed" Type="integer" Value="1" KeyPath="yes" />
        </Component>
        <!--</Component>-->

      </ComponentGroup>
    </Fragment>
  </Wix>

Después de seguir la dirección de ese craigster y está proporcionando advertencias para la línea 31

 <SetDirectpry Id="DesktopFolder" Value="H:\Desktop" />

la advertencia en la línea 41 dice

Show Details    Severity    Code    Description Project File    Line
    Error       The Wix element contains an unexpected child element 'SetDirectory'.    Product.wxs 41
    Warning     The element 'Wix' in namespace 'http://schemas.microsoft.com/wix/2006/wi' has invalid child element 'SetDirectory' in namespace 'http://schemas.microsoft.com/wix/2006/wi'. List of possible elements expected: 'Fragment' in namespace 'http://schemas.microsoft.com/wix/2006/wi'. Product.wxs 41

Dígame qué debo hacer con mi WIX para que se cree un acceso directo en H: \ Desktop

Además, ¿qué debo eliminar porque es innecesario / redundante?