Estou tentando usar o Blaze / Odo para ler um conjunto de resultados grande (~ 70M linhas) do Redshift. Por padrão, o SqlAlchemy tentará ler o resultado inteiro na memória, antes de começar a processá-lo. Isso pode ser evitado porexecution_options(stream_results=True) no mecanismo / sessão ouyield_per(sane_number) na consulta. Ao trabalhar com o Blaze SqlAchemy, as consultas são geradas atrás das cobertas, deixando oexecution_options aproximação. Infelizmente, os seguintes lançamentos e erros.

from sqlalchemy import create_engine
from blaze import Data

redshift_params = (redshift_user, redshift_pass, redshift_endpoint, port, dbname)
engine_string = "redshift+psycopg2://%s:%s@%s:%d/%s" % redshift_params

engine = create_engine(engine_string,
       execution_options=dict(stream_results=True)
       )

db = Data(engine)

A exceção é:

...
/home/mahler/anaconda/lib/python2.7/site-packages/sqlalchemy/engine/result.pyc in __buffer_rows(self)
   1124             return
   1125         size = getattr(self, '_bufsize', 1)
-> 1126         self.__rowbuffer = collections.deque(self.cursor.fetchmany(size))
   1127         self._bufsize = self.size_growth.get(size, size)
   1128         if self._max_row_buffer is not None:

InternalError: (psycopg2.InternalError) opening multiple cursors from within the same client connection is not allowed.

Se eu deixar de fora oexecution_options=dict(stream_results=True) então o acima funciona, mas fazendo algo como

odo(db.mytable, 'mytable.bcolz')

ficará sem memória para tabelas grandes.

Usandoexecution_options(stream_results=True) trabalha compandas.read_csv. O código a seguir funciona bem, usando apenas quantidades moderadas de memória:

from sqlalchemy import create_engine
import pandas as pd

redshift_params = (redshift_user, redshift_pass, redshift_endpoint, port, dbname)
engine_string = "postgresql+psycopg2://%s:%s@%s:%d/%s" % redshift_params

engine = create_engine(engine_string,
       execution_options=dict(stream_results=True)
       )
compression='bz2'
res = pd.read_sql_query(queryString
            engine,
            chunksize=2**20)
for i, df in enumerate(res):
    df.to_csv('results-%s.csv.%s' % (i, compression), compression=compression)

Este é o rastreamento completo da pilha:

...

Data(engine)

No handlers could be found for logger "sqlalchemy.pool.QueuePool"
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/home/mahler/anaconda/lib/python2.7/site-packages/blaze/interactive.py", line 122, in Data
    dshape = discover(data)
  File "/home/mahler/anaconda/lib/python2.7/site-packages/multipledispatch/dispatcher.py", line 164, in __call__
    return func(*args, **kwargs)
  File "/home/mahler/anaconda/lib/python2.7/site-packages/odo/backends/sql.py", line 242, in discover
    return discover(metadata)
  File "/home/mahler/anaconda/lib/python2.7/site-packages/multipledispatch/dispatcher.py", line 164, in __call__
    return func(*args, **kwargs)
  File "/home/mahler/anaconda/lib/python2.7/site-packages/odo/backends/sql.py", line 248, in discover
    metadata.reflect(views=metadata.bind.dialect.supports_views)
  File "/home/mahler/anaconda/lib/python2.7/site-packages/sqlalchemy/sql/schema.py", line 3623, in reflect
    bind.dialect.get_view_names(conn, schema)
  File "<string>", line 2, in get_view_names
  File "/home/mahler/anaconda/lib/python2.7/site-packages/sqlalchemy/engine/reflection.py", line 42, in cache
    return fn(self, con, *args, **kw)
  File "/home/mahler/anaconda/lib/python2.7/site-packages/sqlalchemy/dialects/postgresql/base.py", line 2347, in get_view_names
    for row in connection.execute(s)]
  File "/home/mahler/anaconda/lib/python2.7/site-packages/sqlalchemy/engine/result.py", line 713, in __iter__
    row = self.fetchone()
  File "/home/mahler/anaconda/lib/python2.7/site-packages/sqlalchemy/engine/result.py", line 1026, in fetchone
    self.cursor, self.context)
  File "/home/mahler/anaconda/lib/python2.7/site-packages/sqlalchemy/engine/base.py", line 1341, in _handle_dbapi_exception
    exc_info
  File "/home/mahler/anaconda/lib/python2.7/site-packages/sqlalchemy/util/compat.py", line 200, in raise_from_cause
    reraise(type(exception), exception, tb=exc_tb)
  File "/home/mahler/anaconda/lib/python2.7/site-packages/sqlalchemy/engine/result.py", line 1017, in fetchone
    row = self._fetchone_impl()
  File "/home/mahler/anaconda/lib/python2.7/site-packages/sqlalchemy/engine/result.py", line 1139, in _fetchone_impl
    self.__buffer_rows()
  File "/home/mahler/anaconda/lib/python2.7/site-packages/sqlalchemy/engine/result.py", line 1126, in __buffer_rows
    self.__rowbuffer = collections.deque(self.cursor.fetchmany(size))
sqlalchemy.exc.InternalError: (psycopg2.InternalError) opening multiple cursors from within the same client connection is not allowed.