Parece quegetAnnotatedParameterTypes() retorna uma matriz deAnnotatedTypes mantendo tipos brutos, e não genéricos. Por exemplo:

public <T> void genericMethod(T t) {
}

@Test
public void testAnnotatedTypes() throws ReflectiveOperationException {
    Method method = getClass().getMethod("genericMethod", Object.class);

    Type type = method.getGenericParameterTypes()[0];
    assertTrue(type instanceof TypeVariable);

    AnnotatedType annotatedType = method.getAnnotatedParameterTypes()[0];

    // This fails; annotatedType implements only AnnotatedType
    assertTrue(annotatedType instanceof AnnotatedTypeVariable);

    // This fails too; type is a TypeVariable while annotatedType.getType() is
    // Object.class
    assertEquals(type, annotatedType.getType());
}

Qual é o motivo do desacordo comgetGenericParameterTypes()?