Error al perfilar una secuencia de comandos de multiprocesamiento de Python que funciona perfectamente con cProfile
He escrito un pequeño script de Python que usamultiprocessing
(Verhttps://stackoverflow.com/a/41875711/1878788) Funciona cuando lo pruebo:
$ ./forkiter.py
0
1
2
3
4
sum of x+1: 15
sum of 2*x: 20
sum of x*x: 30
Pero cuando trato de perfilarlo concProfile
, Me sale lo siguiente:
$ python3.6 -m cProfile -o forkiter.prof ./forkiter.py
0
1
2
3
4
Traceback (most recent call last):
File "/home/bli/lib/python3.6/runpy.py", line 193, in _run_module_as_main
"__main__", mod_spec)
File "/home/bli/lib/python3.6/runpy.py", line 85, in _run_code
exec(code, run_globals)
File "/home/bli/lib/python3.6/cProfile.py", line 160, in <module>
main()
File "/home/bli/lib/python3.6/cProfile.py", line 153, in main
runctx(code, globs, None, options.outfile, options.sort)
File "/home/bli/lib/python3.6/cProfile.py", line 20, in runctx
filename, sort)
File "/home/bli/lib/python3.6/profile.py", line 64, in runctx
prof.runctx(statement, globals, locals)
File "/home/bli/lib/python3.6/cProfile.py", line 100, in runctx
exec(cmd, globals, locals)
File "./forkiter.py", line 71, in <module>
exit(main())
File "./forkiter.py", line 67, in main
sum_tuples, results_generator))
File "/home/bli/lib/python3.6/multiprocessing/pool.py", line 699, in next
raise value
File "/home/bli/lib/python3.6/multiprocessing/pool.py", line 385, in _handle_tasks
put(task)
File "/home/bli/lib/python3.6/multiprocessing/connection.py", line 206, in send
self._send_bytes(_ForkingPickler.dumps(obj))
File "/home/bli/lib/python3.6/multiprocessing/reduction.py", line 51, in dumps
cls(buf, protocol).dump(obj)
_pickle.PicklingError: Can't pickle <class '__main__.FuncApplier'>: attribute lookup FuncApplier on __main__ failed
¿Lo que pasa?
Aquí está el guión:
#!/usr/bin/env python3
"""This script tries to work around some limitations of multiprocessing."""
from itertools import repeat, starmap
from multiprocessing import Pool
from functools import reduce
from operator import add
from time import sleep
# Doesn't work because local functions can't be pickled:
# def make_tuple_func(funcs):
# def tuple_func(args_list):
# return tuple(func(args) for func, args in zip(funcs, args_list))
# return tuple_func
#
# test_tuple_func = make_tuple_func((plus_one, double, square))
class FuncApplier(object):
"""This kind of object can be used to group functions and call them on a
tuple of arguments."""
__slots__ = ("funcs", )
def __init__(self, funcs):
self.funcs = funcs
def __len__(self):
return len(self.funcs)
def __call__(self, args_list):
return tuple(func(args) for func, args in zip(self.funcs, args_list))
def fork_args(self, args_list):
"""Takes an arguments list and repeat them in a n-tuple."""
return tuple(repeat(args_list, len(self)))
def sum_tuples(*tuples):
"""Element-wise sum of tuple items."""
return tuple(starmap(add, zip(*tuples)))
# Can't define these functions in main:
# They wouldn't be pickleable.
def plus_one(x):
return x + 1
def double(x):
return 2 * x
def square(x):
return x * x
def main():
def my_generator():
for i in range(5):
print(i)
yield i
test_tuple_func = FuncApplier((plus_one, double, square))
with Pool(processes=5) as pool:
results_generator = pool.imap_unordered(
test_tuple_func,
(test_tuple_func.fork_args(args_list) for args_list in my_generator()))
print("sum of x+1:\t%s\nsum of 2*x:\t%s\nsum of x*x:\t%s" % reduce(
sum_tuples, results_generator))
exit(0)
if __name__ == "__main__":
exit(main())
Algunas pruebas de decapadoAlgunas investigaciones me sugirieron que a veces los objetos necesitaban un__setstate__
y__getstate__
métodos para ser picklable. Esto ayuda para algunos protocolos de decapado, pero esto no parece resolver el problema en elcProfile
caso. Ver las pruebas a continuación.
El script actualizado:
#!/usr/bin/env python3
"""This script tries to work around some limitations of multiprocessing."""
from itertools import repeat, starmap
from multiprocessing import Pool
from functools import reduce
from operator import add
from time import sleep
import pickle
# Doesn't work because local functions can't be pickled:
# def make_tuple_func(funcs):
# def tuple_func(args_list):
# return tuple(func(args) for func, args in zip(funcs, args_list))
# return tuple_func
#
# test_tuple_func = make_tuple_func((plus_one, double, square))
class FuncApplier(object):
"""This kind of object can be used to group functions and call them on a
tuple of arguments."""
__slots__ = ("funcs", )
def __init__(self, funcs):
self.funcs = funcs
def __len__(self):
return len(self.funcs)
def __call__(self, args_list):
return tuple(func(args) for func, args in zip(self.funcs, args_list))
# Attempt to make it pickleable when under cProfile (doesn't help)
def __getstate__(self):
return self.funcs
def __setstate__(self, state):
self.funcs = state
def fork_args(self, args_list):
"""Takes an arguments list and repeat them in a n-tuple."""
return tuple(repeat(args_list, len(self)))
def sum_tuples(*tuples):
"""Element-wise sum of tuple items."""
return tuple(starmap(add, zip(*tuples)))
# Can't define these functions in main:
# They wouldn't be pickleable.
def plus_one(x):
return x + 1
def double(x):
return 2 * x
def square(x):
return x * x
def main():
def my_generator():
for i in range(5):
print(i)
yield i
test_tuple_func = FuncApplier((plus_one, double, square))
print("protocol 0")
try:
print(pickle.dumps(test_tuple_func, 0))
except pickle.PicklingError as err:
print("failed with the following error:\n%s" % err)
print("protocol 1")
try:
print(pickle.dumps(test_tuple_func, 0))
except pickle.PicklingError as err:
print("failed with the following error:\n%s" % err)
print("protocol 2")
try:
print(pickle.dumps(test_tuple_func, 0))
except pickle.PicklingError as err:
print("failed with the following error:\n%s" % err)
print("protocol 3")
try:
print(pickle.dumps(test_tuple_func, 0))
except pickle.PicklingError as err:
print("failed with the following error:\n%s" % err)
print("protocol 4")
try:
print(pickle.dumps(test_tuple_func, 0))
except pickle.PicklingError as err:
print("failed with the following error:\n%s" % err)
with Pool(processes=5) as pool:
results_generator = pool.imap_unordered(
test_tuple_func,
(test_tuple_func.fork_args(args_list) for args_list in my_generator()))
print("sum of x+1:\t%s\nsum of 2*x:\t%s\nsum of x*x:\t%s" % reduce(
sum_tuples, results_generator))
exit(0)
if __name__ == "__main__":
exit(main())
Prueba sincProfile
parece bien:
$ ./forkiter.py
protocol 0
b'ccopy_reg\n_reconstructor\np0\n(c__main__\nFuncApplier\np1\nc__builtin__\nobject\np2\nNtp3\nRp4\n(c__main__\nplus_one\np5\nc__main__\ndouble\np6\nc__main__\nsquare\np7\ntp8\nb.'
protocol 1
b'ccopy_reg\n_reconstructor\np0\n(c__main__\nFuncApplier\np1\nc__builtin__\nobject\np2\nNtp3\nRp4\n(c__main__\nplus_one\np5\nc__main__\ndouble\np6\nc__main__\nsquare\np7\ntp8\nb.'
protocol 2
b'ccopy_reg\n_reconstructor\np0\n(c__main__\nFuncApplier\np1\nc__builtin__\nobject\np2\nNtp3\nRp4\n(c__main__\nplus_one\np5\nc__main__\ndouble\np6\nc__main__\nsquare\np7\ntp8\nb.'
protocol 3
b'ccopy_reg\n_reconstructor\np0\n(c__main__\nFuncApplier\np1\nc__builtin__\nobject\np2\nNtp3\nRp4\n(c__main__\nplus_one\np5\nc__main__\ndouble\np6\nc__main__\nsquare\np7\ntp8\nb.'
protocol 4
b'ccopy_reg\n_reconstructor\np0\n(c__main__\nFuncApplier\np1\nc__builtin__\nobject\np2\nNtp3\nRp4\n(c__main__\nplus_one\np5\nc__main__\ndouble\np6\nc__main__\nsquare\np7\ntp8\nb.'
0
1
2
3
4
sum of x+1: 15
sum of 2*x: 20
sum of x*x: 30
La prueba bajo cProfile falla en cada protocolo de decapado (y, en consecuencia, también en multiprocesamiento):
$ python3.6 -m cProfile -o forkiter.prof ./forkiter.py
protocol 0
failed with the following error:
Can't pickle <class '__main__.FuncApplier'>: attribute lookup FuncApplier on __main__ failed
protocol 1
failed with the following error:
Can't pickle <class '__main__.FuncApplier'>: attribute lookup FuncApplier on __main__ failed
protocol 2
failed with the following error:
Can't pickle <class '__main__.FuncApplier'>: attribute lookup FuncApplier on __main__ failed
protocol 3
failed with the following error:
Can't pickle <class '__main__.FuncApplier'>: attribute lookup FuncApplier on __main__ failed
protocol 4
failed with the following error:
Can't pickle <class '__main__.FuncApplier'>: attribute lookup FuncApplier on __main__ failed
0
1
2
3
4
Traceback (most recent call last):
File "/home/bli/lib/python3.6/runpy.py", line 193, in _run_module_as_main
"__main__", mod_spec)
File "/home/bli/lib/python3.6/runpy.py", line 85, in _run_code
exec(code, run_globals)
File "/home/bli/lib/python3.6/cProfile.py", line 160, in <module>
main()
File "/home/bli/lib/python3.6/cProfile.py", line 153, in main
runctx(code, globs, None, options.outfile, options.sort)
File "/home/bli/lib/python3.6/cProfile.py", line 20, in runctx
filename, sort)
File "/home/bli/lib/python3.6/profile.py", line 64, in runctx
prof.runctx(statement, globals, locals)
File "/home/bli/lib/python3.6/cProfile.py", line 100, in runctx
exec(cmd, globals, locals)
File "./forkiter.py", line 105, in <module>
exit(main())
File "./forkiter.py", line 101, in main
sum_tuples, results_generator))
File "/home/bli/lib/python3.6/multiprocessing/pool.py", line 699, in next
raise value
File "/home/bli/lib/python3.6/multiprocessing/pool.py", line 385, in _handle_tasks
put(task)
File "/home/bli/lib/python3.6/multiprocessing/connection.py", line 206, in send
self._send_bytes(_ForkingPickler.dumps(obj))
File "/home/bli/lib/python3.6/multiprocessing/reduction.py", line 51, in dumps
cls(buf, protocol).dump(obj)
_pickle.PicklingError: Can't pickle <class '__main__.FuncApplier'>: attribute lookup FuncApplier on __main__ failed